As I sift through my memories of autumn, there’s one flavor that always brings me home: the sweet scent of homemade apple pie wafting through the kitchen. Today, I’m thrilled to share a delightful twist on that nostalgic classic—Apple Pie Cupcakes with Cinnamon Cream Cheese Frosting. These mini treats not only capture the essence of traditional apple pie with their luscious, gooey apple filling, but they’re also irresistibly fluffy and oh-so-simple to whip up. Perfect for cozy gatherings or festive fall celebrations, they offer the comfort of a classic dessert in an exciting new form. Imagine the joy of savoring these deliciously spiced cupcakes, topped with creamy frosting that brings it all together. Are you ready to bake a batch of sweet memories?

Why will you love these cupcakes?
Cozy, Nostalgic Flavors: Each bite of these Apple Pie Cupcakes transports you back to warm autumn memories with their gooey apple filling.
Easy to Make: The straightforward process means you can whip up a batch in no time, even if you’re a novice in the kitchen.
Versatile Creation: Switch up the apples or add in some nuts for a unique twist that will impress your friends and family.
Irresistibly Fluffy Texture: These cupcakes are light and fluffy, making them a perfect companion to that rich cinnamon cream cheese frosting.
Perfect for Sharing: Ideal for gatherings, these cupcakes are bound to be a crowd-pleaser, bringing smiles to everyone at the table!
Apple Pie Cupcake Ingredients
• Classic flavors in every bite!
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For the Apple Compote
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4 small tart apples – Choose Granny Smith for a tart flavor or Honeycrisp for a bit more sweetness.
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30 g brown sugar – Enhances the sweetness; coconut sugar is a healthier alternative.
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2 teaspoons cornstarch – Thickens the compote nicely; arrowroot can serve as a substitute.
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1 teaspoon ground cinnamon – Provides warmth and depth to the filling’s flavor.
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50 g water – Aids in cooking the apples to perfection; adjust to prevent burning.
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For the Cupcakes
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185 g cake flour – Gives the cupcakes their light structure; try all-purpose flour or a gluten-free blend if needed.
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1 ½ teaspoons baking powder – Ensures the cupcakes rise beautifully; always check for freshness.
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1 teaspoon ground cinnamon – Layering flavors adds depth to the cupcake base.
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½ teaspoon salt – Balances out the sweetness, enhancing overall flavor.
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115 g unsalted butter – Adds richness; substitute with dairy-free options for a lactose-free treat.
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200 g granulated sugar – Sweetens the batter; consider a sugar substitute if preferred.
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3 large eggs – Binds all ingredients and enriches the cupcakes; flaxseed eggs can be a vegan option.
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1 teaspoon vanilla extract – Infuses a beautiful aroma; opt for pure vanilla for the best taste.
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150 g milk – Keeps the batter moist; dairy-free alternatives work well too.
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For the Frosting
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60 g unsalted butter – A rich base for the frosting; dairy-free versions are acceptable.
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125 g cream cheese – Provides the tangy creaminess; dairy-free cream cheese can be used.
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75 g powdered sugar – Sweetens the frosting; adjust to your taste preference.
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1 teaspoon ground cinnamon (for frosting) – Enhances the frosting’s flavor profile.
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1 teaspoon vanilla extract (for frosting) – Complements the overall taste beautifully.
With this delightful ingredient list, you’re just steps away from creating warm, homemade apple pie cupcakes that are perfect for any occasion! Happy baking!
Step‑by‑Step Instructions for Apple Pie Cupcakes
Step 1: Cook Apple Filling
In a medium saucepan, combine diced apples, brown sugar, cornstarch, cinnamon, and water. Heat this mixture over medium-high until it reaches a boil, then reduce the heat and let it simmer for about 10 minutes. Stir frequently until the apples are tender and the liquid thickens. Once ready, remove from heat and allow it to cool while you prepare the cupcake batter.
Step 2: Preheat Oven
Before you mix your cupcake batter, preheat your oven to 350°F (175°C). While it’s heating up, prepare your muffin pan by lining it with cupcake liners, ensuring they are snug in each cavity. This will make it easier to remove your delightful apple pie cupcakes once they are baked.
Step 3: Mix Dry Ingredients
In a large bowl, whisk together the cake flour, baking powder, ground cinnamon, and salt until they’re well combined. This step ensures that your dry ingredients are evenly distributed, contributing to the fluffy texture of your apple pie cupcakes. Set this mixture aside while you work on the wet ingredients.
Step 4: Prepare Wet Mixture
In a separate bowl, beat the softened unsalted butter with granulated sugar using an electric mixer until the mixture is light and fluffy, about 3-5 minutes. Next, add in the eggs one at a time, mixing well after each addition. Finally, blend in the vanilla extract for an aromatic touch that complements the apple pie flavors beautifully.
Step 5: Combine Mixtures
Gradually add the dry ingredients into the wet mixture, alternating with the milk. Mix gently until just combined, being careful not to overmix. You want the batter to remain airy for those irresistible fluffy apple pie cupcakes. Watch for the smooth yet slightly lumpy consistency, which helps achieve the perfect texture.
Step 6: Fill Cupcake Liners
Spoon the batter into the prepared cupcake liners, filling each one about two-thirds full to allow for rising. This step is essential as it prevents overflow while baking. Take care to distribute the batter evenly among the liners to ensure that all your apple pie cupcakes bake uniformly.
Step 7: Bake
Place the filled muffin pan in the preheated oven and bake for about 20 minutes. Keep an eye on the cupcakes; they are done when a toothpick inserted into the center comes out clean. After baking, let them cool in the pan for 5-10 minutes before transferring the cupcakes to a wire rack to cool completely.
Step 8: Make Frosting
For the luscious cream cheese frosting, beat the softened unsalted butter and cream cheese together in a bowl until smooth and creamy. Gradually add in the powdered sugar, ground cinnamon, and vanilla extract, mixing until it’s light and fluffy. Make sure there are no lumps for the most delightful frosting experience.
Step 9: Assemble Cupcakes
Once your apple pie cupcakes have cooled completely, use a small knife or cupcake corer to scoop out the center of each cupcake. Spoon in the cooled apple compote, filling each one generously. Finally, pipe the rich cinnamon cream cheese frosting on top for that perfect finishing touch, and get ready to impress with your deliciously festive treats!

Expert Tips for Apple Pie Cupcakes
- Room Temperature Eggs: Ensure your eggs are at room temperature before mixing for a smoother batter and evenly risen cupcakes.
- Avoid Overmixing: Gently mix your batter until just combined to keep the cupcakes soft and fluffy; overmixing can make them dense.
- Check Compote Consistency: Aim for a thick apple compote that holds its shape when scooped into the cupcake; adjust cooking time if necessary.
- Adjust Sweetness: Feel free to tweak the amount of sugar in the frosting to suit your taste; you can always add more powdered sugar for a sweeter finish.
- Creative Frosting Designs: Try different piping tips for frosting to enhance the visual appeal and make your apple pie cupcakes truly stand out.
Make Ahead Options
These Apple Pie Cupcakes are perfect for busy home cooks looking to save time during the week! You can prepare the apple compote and the cupcake batter up to 24 hours in advance. Simply make the apple filling as directed and refrigerate it in an airtight container. The cupcake batter can also be prepared ahead; just mix and store in the fridge, ensuring it’s covered tightly to maintain moisture. When you’re ready to bake, fill your cupcake liners and pop them in the oven. For the best results, frost the cooled cupcakes the same day for that fresh flavor, and you’ll have delightful treats that are just as scrumptious!
What to Serve with Apple Pie Cupcakes
Imagine gathering around the table with family and friends, sharing not just these delightful cupcakes, but a feast of cozy flavors and feelings of togetherness.
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Vanilla Ice Cream: A classic pairing that adds creamy richness, melting delightfully over the warm apple compote in the cupcakes.
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Spiced Apple Cider: Enhance the autumn experience with a warm cup of spiced cider, complementing the cinnamon notes in the cupcakes beautifully.
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Caramel Sauce: Drizzle some homemade caramel over your cupcakes for an indulgent touch—it’s a sweet contrast that elevates every bite.
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Pecan Pie Bars: Serve alongside these cupcakes to create a dessert platter that balances flavors, textures, and warm memories of holiday gatherings.
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Maple Glazed Donuts: Add a playful element with fluffy donuts, providing a sweet alternative and delightful texture next to the cupcakes.
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Chai Tea: Brew a warm cup of chai tea to bring out the spices in the cupcakes and create an aromatic, heartwarming experience.
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Chocolate Chip Cookies: For a classic cookie experience, chocolate chip cookies bring a nostalgic touch and satisfy every sweet tooth at the table.
Apple Pie Cupcakes Variations & Substitutions
Feel free to play with this recipe and discover new flavors that reflect your unique taste!
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Different Apples: Experiment with a mix of apple varieties, combining tart Granny Smith with sweet Fuji for a delightful contrast. This combination enhances the flavor profile and adds depth.
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Whole Wheat Flour: Substitute half of the cake flour with whole wheat flour for a heartier texture and a touch of nutty flavor. This small swap adds nutritional benefits without compromising deliciousness.
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Nutty Addition: Toss in some chopped pecans or walnuts for a delightful crunch. They not only enhance the texture but also provide a nice contrast to the soft cupcake.
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Sugar Alternatives: Use coconut sugar or a sugar substitute to sweeten the batter while staying health-conscious. It’s an easy way to cut back on refined sugars.
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Dairy-Free Version: Swap the butter and cream cheese with their dairy-free alternatives for a lactose-free treat. This ensures everyone can enjoy these delicious cupcakes without worry.
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Spicy Twist: Add a pinch of nutmeg or cardamom to the cinnamon for a warm twist. These spices create a cozy aroma and elevate the flavors of the apple filling.
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Fruity Frosting: Incorporate maple syrup or honey into your frosting for a hint of natural sweetness. This will give it a rich taste that pairs beautifully with the cinnamon.
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Heat It Up: For those who enjoy a kick, a dash of cayenne pepper or chili powder can be added to the apple compote for a surprising yet delightful heat.
Exploring these variations can transform your apple pie cupcakes into something uniquely yours. If you’re looking for more inspiration, consider adding a scoop of vanilla ice cream for an indulgent pairing or checking out our recipe for Cinnamon Roll Cupcakes for another flavor adventure that your family will love!
How to Store and Freeze Apple Pie Cupcakes
Fridge: Keep the apple pie cupcakes in an airtight container for up to 3 days. This preserves their soft texture and delicious flavor without drying them out.
Freezer: For longer storage, freeze the cupcakes in an airtight container or freezer bag for up to 1 month. Make sure to separate layers with parchment paper to avoid sticking.
Thawing: When ready to enjoy, simply thaw the cupcakes at room temperature for about 1-2 hours before serving. This ensures they remain moist and flavorful.
Reheating: If desired, reheat individual cupcakes in the microwave for about 10-15 seconds, making sure not to overdo it to keep them fluffy and tender.

Apple Pie Cupcakes Recipe FAQs
What type of apples should I use for the filling?
Absolutely! For the best flavor, I recommend using 4 small tart apples, like Granny Smith, which adds a lovely tartness, or Honeycrisp for a sweeter bite. Mixing the two can create a delightful balance!
How should I store leftover cupcakes?
Keep your apple pie cupcakes in an airtight container in the fridge for up to 3 days. This keeps them fresh and soft, ensuring you can enjoy that delicious flavor even after the first day!
Can I freeze apple pie cupcakes?
Yes, indeed! To freeze your cupcakes, simply place them in an airtight container or freezer bag, separating layers with parchment paper to prevent sticking. They can stay fresh for up to 1 month. When you’re ready to enjoy them, thaw at room temperature for about 1-2 hours.
What can I do if my cupcake batter is too thick?
If you find that your cupcake batter seems too thick, don’t panic! You can add a little more milk, one tablespoon at a time, mixing gently until you achieve a smooth consistency. Just be careful not to overmix, which can lead to dense cupcakes!
Are these cupcakes suitable for people with nut allergies?
Yes, these apple pie cupcakes can easily be made nut-free! Just omit any nuts you might consider adding, and be sure to check your ingredients for cross-contamination warnings. Always a safe option for gatherings!
Can I improve the frosting recipe?
Definitely! You can adjust the sweetness of the frosting by adding more powdered sugar to your taste. For a unique twist, try incorporating a dash of maple syrup or a pinch of nutmeg for extra flavor!

Deliciously Soft Apple Pie Cupcakes for Cozy Autumn Days
Ingredients
Equipment
Method
- In a medium saucepan, combine diced apples, brown sugar, cornstarch, cinnamon, and water. Heat until boiling, then simmer for 10 minutes until apples are tender and liquid thickens.
- Preheat your oven to 350°F (175°C) and line a muffin pan with cupcake liners.
- In a large bowl, whisk together the cake flour, baking powder, ground cinnamon, and salt.
- In a separate bowl, beat softened unsalted butter with granulated sugar until light and fluffy. Add the eggs one at a time, mixing well, then blend in vanilla extract.
- Gradually add dry ingredients to wet mixture, alternating with milk until just combined.
- Spoon the batter into cupcake liners, filling each two-thirds full.
- Bake for about 20 minutes or until a toothpick inserted comes out clean. Let cool in the pan for 5-10 minutes before transferring to a wire rack.
- Beat together softened unsalted butter and cream cheese until smooth. Gradually add powdered sugar, ground cinnamon, and vanilla extract until fluffy.
- Once cooled, scoop out the center of each cupcake and fill with cooled apple compote, then pipe frosting on top.





